No. words: 1541; after pruning: 1515


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:754)  722  0.40 0.00 0.00  USDA004F_D11_BE497177As02P004F05F11F1_090.ab1        1   751 (0)  C USDA004R_D11_BE497177As02P004F05F11R1_090.ab1   (35)   755     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C USDA004R_D11_BE497177As02P004F05F11R1_090.ab1   790 
   39    USDA004F_D11_BE497177As02P004F05F11F1_090.ab1     4 
   47  C USDA004R_D11_BE497177As02P004F05F11R1_090.ab1   744 
   51    USDA004F_D11_BE497177As02P004F05F11F1_090.ab1    16 
   55  C USDA004R_D11_BE497177As02P004F05F11R1_090.ab1   736 
  103    USDA004F_D11_BE497177As02P004F05F11F1_090.ab1    68 
  115  C USDA004R_D11_BE497177As02P004F05F11R1_090.ab1   676 
  139    USDA004F_D11_BE497177As02P004F05F11F1_090.ab1   104 
  147  C USDA004R_D11_BE497177As02P004F05F11R1_090.ab1   644 
  171    USDA004F_D11_BE497177As02P004F05F11F1_090.ab1   136 
  175  C USDA004R_D11_BE497177As02P004F05F11R1_090.ab1   616 
  183    USDA004F_D11_BE497177As02P004F05F11F1_090.ab1   148 
  187  C USDA004R_D11_BE497177As02P004F05F11R1_090.ab1   604 
  211    USDA004F_D11_BE497177As02P004F05F11F1_090.ab1   176 
  215  C USDA004R_D11_BE497177As02P004F05F11R1_090.ab1   576 
  297    USDA004F_D11_BE497177As02P004F05F11F1_090.ab1   262 
  301  C USDA004R_D11_BE497177As02P004F05F11R1_090.ab1   490 
Contig length: old 790, new 790

Contig length: old 790, new 790
New start: 0