No. words: 1571; after pruning: 1545


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.0 (1,1:764)  744  0.00 0.00 0.00  USDA004F_E11_BE497177At01P004F05F11F1_083.ab1        1   765 (23)  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   (18)   765     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   783 
   26    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1     8 
   50  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   734 
   54    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1    36 
   58  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   726 
   62    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1    44 
  174  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   610 
  178    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   160 
  218  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   566 
  222    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   204 
  230  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   554 
  234    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   216 
  262  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   522 
  266    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   248 
  290  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   494 
  302    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   284 
  310  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   474 
  314    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   296 
  318  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   466 
  346    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   328 
  350  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   434 
  354    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   336 
  358  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   426 
  362    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   344 
  374  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   410 
  378    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   360 
  386  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   398 
  438    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   420 
  450  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   334 
  498    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   480 
  502  C USDA004R_E11_BE497177At01P004F05F11R1_083.ab1   282 
  778    USDA004F_E11_BE497177At01P004F05F11F1_083.ab1   760 
Contig length: old 806, new 806

Contig length: old 806, new 806
New start: 0