No. words: 1598; after pruning: 1572


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:810)  743  0.39 0.13 0.00  USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1        1   777 (0)  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   (10)   811    34 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   821 
   15    USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1     5 
   19  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   803 
   23    USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1    13 
   31  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   791 
   52    USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1    41 
   68  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   754 
   84    USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1    73 
   96  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   726 
  104    USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1    93 
  108  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   714 
  112    USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1   101 
  132  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   690 
  140    USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1   129 
  156  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   666 
  160    USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1   149 
  180  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   642 
  204    USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1   193 
  212  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   610 
  220    USDA004F_A12_BE497177Ld03P004F05F11F1_085.ab1   209 
  228  C USDA004R_A12_BE497177Ld03P004F05F11R1_085.ab1   594 
Contig length: old 821, new 821

Contig length: old 821, new 821
New start: 0