No. words: 1654; after pruning: 1628


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.8 (1,1:810)  751  0.26 0.00 0.00  USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1        1   778 (1)  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   (64)   811    34 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   875 
   77    USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1    13 
   89  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   787 
   97    USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1    33 
  101  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   775 
  105    USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1    41 
  121  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   755 
  129    USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1    65 
  133  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   743 
  137    USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1    73 
  149  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   727 
  165    USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1   101 
  189  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   687 
  193    USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1   129 
  209  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   667 
  217    USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1   153 
  229  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   647 
  245    USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1   181 
  249  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   627 
  257    USDA004F_B12_BE497177Ld04P004F05F11F1_093.ab1   193 
  265  C USDA004R_B12_BE497177Ld04P004F05F11R1_093.ab1   611 
Contig length: old 875, new 875

Contig length: old 875, new 875
New start: 0