No. words: 1614; after pruning: 1588


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:798)  740  0.13 0.26 0.00  USDA004F_D12_BE497177Ld06P004F05F11F1_094.ab1        1   769 (0)  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   (45)   800    30 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   845 
   64    USDA004F_D12_BE497177Ld06P004F05F11F1_094.ab1    17 
   92  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   754 
   96    USDA004F_D12_BE497177Ld06P004F05F11F1_094.ab1    49 
  100  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   746 
  108    USDA004F_D12_BE497177Ld06P004F05F11F1_094.ab1    61 
  112  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   734 
  116    USDA004F_D12_BE497177Ld06P004F05F11F1_094.ab1    69 
  176  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   670 
  188    USDA004F_D12_BE497177Ld06P004F05F11F1_094.ab1   141 
  200  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   646 
  332    USDA004F_D12_BE497177Ld06P004F05F11F1_094.ab1   285 
  344  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   502 
  376    USDA004F_D12_BE497177Ld06P004F05F11F1_094.ab1   329 
  380  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   466 
  404    USDA004F_D12_BE497177Ld06P004F05F11F1_094.ab1   357 
  428  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   418 
  480    USDA004F_D12_BE497177Ld06P004F05F11F1_094.ab1   433 
  488  C USDA004R_D12_BE497177Ld06P004F05F11R1_094.ab1   358 
Contig length: old 845, new 845

Contig length: old 845, new 845
New start: 0