No. words: 1618; after pruning: 1592


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:809)  753  0.13 0.00 0.00  USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1        1   778 (0)  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   (30)   810    33 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   840 
   35    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1     5 
   39  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   802 
   47    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1    17 
   55  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   786 
   63    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1    33 
   87  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   754 
   95    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1    65 
   99  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   742 
  103    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1    73 
  115  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   726 
  123    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1    93 
  127  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   714 
  131    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1   101 
  155  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   686 
  159    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1   129 
  167  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   674 
  187    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1   157 
  195  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   646 
  215    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1   185 
  231  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   610 
  327    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1   297 
  331  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   510 
  474    USDA004F_E12_BE497177Ld07P004F05F11F1_087.ab1   444 
  478  C USDA004R_E12_BE497177Ld07P004F05F11R1_087.ab1   363 
Contig length: old 840, new 840

Contig length: old 840, new 840
New start: 0