No. words: 1606; after pruning: 1580


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:803)  728  0.26 0.26 0.00  USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1        1   759 (0)  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   (42)   805    45 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  370 nodes

 187 str. conn. components

Path
    1  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   847 
   67    USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1    23 
  185  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   663 
  193    USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1   149 
  213  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   635 
  217    USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1   173 
  373  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   475 
  381    USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1   337 
  385  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   463 
  389    USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1   345 
  441  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   407 
  445    USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1   401 
  469  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   379 
  481    USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1   437 
  489  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   359 
  501    USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1   457 
  509  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   339 
  529    USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1   485 
  545  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   303 
  565    USDA004F_F12_BE497177Ld08P004F05F11F1_095.ab1   521 
  569  C USDA004R_F12_BE497177Ld08P004F05F11R1_095.ab1   279 
Contig length: old 847, new 847

Contig length: old 847, new 847
New start: 0 
S Change at: 73; seg lengths: entry 1, contig 1