No. words: 1730; after pruning: 1704


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.3 (1,1:811)  778  0.12 0.00 0.25  USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1        1   813 (60)  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   (46)   811     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   857 
   51    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1     5 
   55  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   803 
   59    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1    13 
  107  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   751 
  111    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1    65 
  171  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   687 
  175    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   129 
  191  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   667 
  199    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   153 
  263  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   595 
  275    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   229 
  279  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   579 
  299    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   253 
  303  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   555 
  307    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   261 
  311  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   547 
  327    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   281 
  331  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   527 
  335    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   289 
  347  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   511 
  351    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   305 
  355  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   503 
  363    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   317 
  371  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   487 
  399    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   353 
  403  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   455 
  415    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   369 
  427  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   431 
  435    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   389 
  443  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   415 
  482    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   436 
  494  C USDA004R_G12_BE497177Ld09P004F05F11R1_088.ab1   364 
  838    USDA004F_G12_BE497177Ld09P004F05F11F1_088.ab1   792 
Contig length: old 918, new 919

Contig length: old 919, new 919
New start: 0