No. words: 1086; after pruning: 1060


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 4.7 (1,1:494)  460  0.81 0.20 0.00  USDA021F_C08_BE497177Ta11P043D06P004F051F1_060.ab1        5   495 (55)  C USDA021R_C08_BE497177Ta11P043D06P004F051R1_060.ab1   (44)   492     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA021R_C08_BE497177Ta11P043D06P004F051R1_060.ab1   536 
   55    USDA021F_C08_BE497177Ta11P043D06P004F051F1_060.ab1    14 
  127  C USDA021R_C08_BE497177Ta11P043D06P004F051R1_060.ab1   410 
  131    USDA021F_C08_BE497177Ta11P043D06P004F051F1_060.ab1    90 
Contig length: old 591, new 591

Contig length: old 591, new 591
New start: 0