No. words: 1081; after pruning: 1055


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 0.0 (1,1:489)  455  1.03 0.00 0.00  USDA021F_D08_BE497177Ta12P043D06P004F051F1_058.ab1        5   490 (62)  C USDA021R_D08_BE497177Ta12P043D06P004F051R1_058.ab1   (43)   486     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA021R_D08_BE497177Ta12P043D06P004F051R1_058.ab1   529 
   55    USDA021F_D08_BE497177Ta12P043D06P004F051F1_058.ab1    16 
   67  C USDA021R_D08_BE497177Ta12P043D06P004F051R1_058.ab1   463 
   71    USDA021F_D08_BE497177Ta12P043D06P004F051F1_058.ab1    32 
Contig length: old 591, new 591

Contig length: old 591, new 591
New start: 0