No. words: 1083; after pruning: 1057


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 2.1 (1,1:500)  454  1.21 0.20 0.20  USDA021F_E08_BE497177Ta13P043D06P004F051F1_056.ab1        5   501 (47)  C USDA021R_E08_BE497177Ta13P043D06P004F051R1_056.ab1   (38)   497     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1  C USDA021R_E08_BE497177Ta13P043D06P004F051R1_056.ab1   535 
   53    USDA021F_E08_BE497177Ta13P043D06P004F051F1_056.ab1    18 
Contig length: old 582, new 583

Contig length: old 583, new 583
New start: 0