No. words: 1078; after pruning: 1052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.8 (1,1:492)  460  0.61 0.20 0.20  USDA021F_G08_BE497177Ta15P043D06P004F051F1_052.ab1        1   493 (51)  C USDA021R_G08_BE497177Ta15P043D06P004F051R1_052.ab1   (41)   493     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA021R_G08_BE497177Ta15P043D06P004F051R1_052.ab1   534 
   56    USDA021F_G08_BE497177Ta15P043D06P004F051F1_052.ab1    14 
   60  C USDA021R_G08_BE497177Ta15P043D06P004F051R1_052.ab1   475 
   68    USDA021F_G08_BE497177Ta15P043D06P004F051F1_052.ab1    26 
  144  C USDA021R_G08_BE497177Ta15P043D06P004F051R1_052.ab1   391 
  152    USDA021F_G08_BE497177Ta15P043D06P004F051F1_052.ab1   110 
  186  C USDA021R_G08_BE497177Ta15P043D06P004F051R1_052.ab1   349 
  198    USDA021F_G08_BE497177Ta15P043D06P004F051F1_052.ab1   156 
Contig length: old 585, new 586

Contig length: old 586, new 586
New start: 0