No. words: 1076; after pruning: 1050


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.3 (1,1:490)  467  0.00 0.21 0.00  USDA021F_A09_BE497177Ta17P043D06P004F051F1_079.ab1        2   487 (57)  C USDA021R_A09_BE497177Ta17P043D06P004F051R1_079.ab1   (41)   491     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C USDA021R_A09_BE497177Ta17P043D06P004F051R1_079.ab1   532 
   80    USDA021F_A09_BE497177Ta17P043D06P004F051F1_079.ab1    39 
   92  C USDA021R_A09_BE497177Ta17P043D06P004F051R1_079.ab1   441 
  104    USDA021F_A09_BE497177Ta17P043D06P004F051F1_079.ab1    63 
  112  C USDA021R_A09_BE497177Ta17P043D06P004F051R1_079.ab1   421 
  136    USDA021F_A09_BE497177Ta17P043D06P004F051F1_079.ab1    95 
  180  C USDA021R_A09_BE497177Ta17P043D06P004F051R1_079.ab1   353 
  196    USDA021F_A09_BE497177Ta17P043D06P004F051F1_079.ab1   155 
Contig length: old 585, new 585

Contig length: old 585, new 585
New start: 0