No. words: 1103; after pruning: 1077


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 2.0 (1,1:511)  474  0.00 0.59 0.20  USDA021F_B09_BE497177Ta18P043D06P004F051F1_077.ab1        6   512 (51)  C USDA021R_B09_BE497177Ta18P043D06P004F051R1_077.ab1   (31)   509     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C USDA021R_B09_BE497177Ta18P043D06P004F051R1_077.ab1   540 
   75    USDA021F_B09_BE497177Ta18P043D06P004F051F1_077.ab1    46 
  115  C USDA021R_B09_BE497177Ta18P043D06P004F051R1_077.ab1   426 
  119    USDA021F_B09_BE497177Ta18P043D06P004F051F1_077.ab1    90 
  131  C USDA021R_B09_BE497177Ta18P043D06P004F051R1_077.ab1   410 
  135    USDA021F_B09_BE497177Ta18P043D06P004F051F1_077.ab1   106 
  147  C USDA021R_B09_BE497177Ta18P043D06P004F051R1_077.ab1   394 
  151    USDA021F_B09_BE497177Ta18P043D06P004F051F1_077.ab1   122 
Contig length: old 591, new 592

Contig length: old 592, new 592
New start: 0