No. words: 1095; after pruning: 1069


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    4   -2.5 -2.5 (1,1:505)  458  0.80 0.60 0.00  USDA021F_C09_BE497177Ta19P043D06P004F051F1_075.ab1        5   501 (60)  C USDA021R_C09_BE497177Ta19P043D06P004F051R1_075.ab1   (30)   504     5 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.5       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA021R_C09_BE497177Ta19P043D06P004F051R1_075.ab1   534 
   54    USDA021F_C09_BE497177Ta19P043D06P004F051F1_075.ab1    25 
Contig length: old 589, new 590

Contig length: old 590, new 590
New start: 0