No. words: 1096; after pruning: 1070


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   14    0.0 3.7 (1,1:505)  466  0.41 0.00 0.00  USDA021F_D09_BE497177Ta20P043D06P004F051F1_073.ab1       15   502 (61)  C USDA021R_D09_BE497177Ta20P043D06P004F051R1_073.ab1   (41)   492     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
14       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA021R_D09_BE497177Ta20P043D06P004F051R1_073.ab1   533 
   73    USDA021F_D09_BE497177Ta20P043D06P004F051F1_073.ab1    46 
  129  C USDA021R_D09_BE497177Ta20P043D06P004F051R1_073.ab1   405 
  133    USDA021F_D09_BE497177Ta20P043D06P004F051F1_073.ab1   106 
  153  C USDA021R_D09_BE497177Ta20P043D06P004F051R1_073.ab1   381 
  157    USDA021F_D09_BE497177Ta20P043D06P004F051F1_073.ab1   130 
  190  C USDA021R_D09_BE497177Ta20P043D06P004F051R1_073.ab1   344 
  198    USDA021F_D09_BE497177Ta20P043D06P004F051F1_073.ab1   171 
Contig length: old 590, new 590

Contig length: old 590, new 590
New start: 0