No. words: 1091; after pruning: 1065


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.4 (1,1:505)  467  0.20 0.60 0.20  USDA021F_B07_BE497177Td02P043D06P004F051F1_061.ab1        5   506 (53)  C USDA021R_B07_BE497177Td02P043D06P004F051R1_061.ab1   (28)   504     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA021R_B07_BE497177Td02P043D06P004F051R1_061.ab1   532 
   56    USDA021F_B07_BE497177Td02P043D06P004F051F1_061.ab1    29 
   64  C USDA021R_B07_BE497177Td02P043D06P004F051R1_061.ab1   469 
   68    USDA021F_B07_BE497177Td02P043D06P004F051F1_061.ab1    41 
Contig length: old 585, new 586

Contig length: old 586, new 586
New start: 0