No. words: 1091; after pruning: 1065


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   15    0.0 0.5 (1,1:503)  456  1.03 0.00 0.00  USDA021F_D07_BE497177Td04P043D06P004F051F1_057.ab1       16   502 (58)  C USDA021R_D07_BE497177Td04P043D06P004F051R1_057.ab1   (42)   489     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
15       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA021R_D07_BE497177Td04P043D06P004F051R1_057.ab1   531 
   54    USDA021F_D07_BE497177Td04P043D06P004F051F1_057.ab1    27 
Contig length: old 587, new 587

Contig length: old 587, new 587
New start: 0