No. words: 1085; after pruning: 1059


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 0.0 (1,1:492)  447  1.44 0.21 0.00  USDA021F_F07_BE497177Td06P043D06P004F051F1_053.ab1        5   491 (60)  C USDA021R_F07_BE497177Td06P043D06P004F051R1_053.ab1   (44)   490     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C USDA021R_F07_BE497177Td06P043D06P004F051R1_053.ab1   534 
   58    USDA021F_F07_BE497177Td06P043D06P004F051F1_053.ab1    17 
Contig length: old 592, new 592

Contig length: old 592, new 592
New start: 0