No. words: 1103; after pruning: 1077


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   13    0.0 2.2 (1,1:511)  468  0.60 0.00 0.20  USDA021F_G07_BE497177Td07P043D06P004F051F1_051.ab1       14   512 (49)  C USDA021R_G07_BE497177Td07P043D06P004F051R1_051.ab1   (44)   498     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
13       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA021R_G07_BE497177Td07P043D06P004F051R1_051.ab1   542 
   60    USDA021F_G07_BE497177Td07P043D06P004F051F1_051.ab1    29 
   64  C USDA021R_G07_BE497177Td07P043D06P004F051R1_051.ab1   479 
   76    USDA021F_G07_BE497177Td07P043D06P004F051F1_051.ab1    45 
  132  C USDA021R_G07_BE497177Td07P043D06P004F051R1_051.ab1   411 
  144    USDA021F_G07_BE497177Td07P043D06P004F051F1_051.ab1   113 
  193  C USDA021R_G07_BE497177Td07P043D06P004F051R1_051.ab1   350 
  201    USDA021F_G07_BE497177Td07P043D06P004F051F1_051.ab1   170 
Contig length: old 591, new 592

Contig length: old 592, new 592
New start: 0