No. words: 1096; after pruning: 1070


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.2 (1,1:505)  469  0.59 0.59 0.00  USDA021F_H07_BE497177Td08P043D06P004F051F1_049.ab1        1   505 (50)  C USDA021R_H07_BE497177Td08P043D06P004F051R1_049.ab1   (33)   508     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA021R_H07_BE497177Td08P043D06P004F051R1_049.ab1   541 
   58    USDA021F_H07_BE497177Td08P043D06P004F051F1_049.ab1    22 
   66  C USDA021R_H07_BE497177Td08P043D06P004F051R1_049.ab1   476 
   70    USDA021F_H07_BE497177Td08P043D06P004F051F1_049.ab1    34 
  126  C USDA021R_H07_BE497177Td08P043D06P004F051R1_049.ab1   416 
  130    USDA021F_H07_BE497177Td08P043D06P004F051F1_049.ab1    94 
Contig length: old 590, new 591

Contig length: old 591, new 591
New start: 0