No. words: 1088; after pruning: 1062


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:485)  460  0.41 0.21 0.00  USDA021F_A08_BE497177Td09P043D06P004F051F1_064.ab1        2   486 (62)  C USDA021R_A08_BE497177Td09P043D06P004F051R1_064.ab1   (54)   486     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C USDA021R_A08_BE497177Td09P043D06P004F051R1_064.ab1   540 
   69    USDA021F_A08_BE497177Td09P043D06P004F051F1_064.ab1    15 
   73  C USDA021R_A08_BE497177Td09P043D06P004F051R1_064.ab1   468 
  130    USDA021F_A08_BE497177Td09P043D06P004F051F1_064.ab1    76 
  138  C USDA021R_A08_BE497177Td09P043D06P004F051R1_064.ab1   403 
  142    USDA021F_A08_BE497177Td09P043D06P004F051F1_064.ab1    88 
  166  C USDA021R_A08_BE497177Td09P043D06P004F051R1_064.ab1   375 
  174    USDA021F_A08_BE497177Td09P043D06P004F051F1_064.ab1   120 
  202  C USDA021R_A08_BE497177Td09P043D06P004F051R1_064.ab1   339 
  214    USDA021F_A08_BE497177Td09P043D06P004F051F1_064.ab1   160 
  230  C USDA021R_A08_BE497177Td09P043D06P004F051R1_064.ab1   311 
  234    USDA021F_A08_BE497177Td09P043D06P004F051F1_064.ab1   180 
  250  C USDA021R_A08_BE497177Td09P043D06P004F051R1_064.ab1   291 
  258    USDA021F_A08_BE497177Td09P043D06P004F051F1_064.ab1   204 
Contig length: old 602, new 602

Contig length: old 602, new 602
New start: 0