No. words: 1107; after pruning: 1081


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 1.3 (1,1:511)  459  0.79 0.59 0.39  USDA021F_B08_BE497177Td10P043D06P004F051F1_062.ab1        4   512 (47)  C USDA021R_B08_BE497177Td10P043D06P004F051R1_062.ab1   (38)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA021R_B08_BE497177Td10P043D06P004F051R1_062.ab1   548 
   66    USDA021F_B08_BE497177Td10P043D06P004F051F1_062.ab1    28 
   74  C USDA021R_B08_BE497177Td10P043D06P004F051R1_062.ab1   475 
   82    USDA021F_B08_BE497177Td10P043D06P004F051F1_062.ab1    44 
   86  C USDA021R_B08_BE497177Td10P043D06P004F051R1_062.ab1   463 
  107    USDA021F_B08_BE497177Td10P043D06P004F051F1_062.ab1    70 
  111  C USDA021R_B08_BE497177Td10P043D06P004F051R1_062.ab1   438 
  115    USDA021F_B08_BE497177Td10P043D06P004F051F1_062.ab1    78 
  135  C USDA021R_B08_BE497177Td10P043D06P004F051R1_062.ab1   414 
  147    USDA021F_B08_BE497177Td10P043D06P004F051F1_062.ab1   110 
Contig length: old 595, new 596

Contig length: old 596, new 596
New start: 0