No. words: 1569; after pruning: 1543


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 16.5 (1,1:770)  744  0.00 0.00 0.00  USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1        1   767 (20)  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   (11)   771     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   782 
   15    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1     4 
  263  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   520 
  267    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1   256 
  275  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   508 
  279    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1   268 
  327  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   456 
  335    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1   324 
  339  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   444 
  347    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1   336 
  391  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   392 
  403    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1   392 
  415  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   368 
  419    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1   408 
  443  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   340 
  447    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1   436 
  451  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   332 
  459    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1   448 
  467  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   316 
  487    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1   476 
  503  C USDA004R_B11_BE497177Tu02P004F05F11R1_089.ab1   280 
  775    USDA004F_B11_BE497177Tu02P004F05F11F1_089.ab1   764 
Contig length: old 798, new 798

Contig length: old 798, new 798
New start: 0