No. words: 328; after pruning: 302


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.5 (1,1:-3)  147  1.86 0.62 0.00  USDA007_G05_BE498820Ld01P017C03C09F1_035.ab1        1   161 (2)    USDA007_G11_BE498820Ld01P017C03C09R1_083.ab1        4   165 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1    USDA007_G11_BE498820Ld01P017C03C09R1_083.ab1     1 
   15    USDA007_G05_BE498820Ld01P017C03C09F1_035.ab1    12 
   19    USDA007_G11_BE498820Ld01P017C03C09R1_083.ab1    19 
   53    USDA007_G05_BE498820Ld01P017C03C09F1_035.ab1    49 
   57    USDA007_G11_BE498820Ld01P017C03C09R1_083.ab1    57 
   93    USDA007_G05_BE498820Ld01P017C03C09F1_035.ab1    89 
  113    USDA007_G11_BE498820Ld01P017C03C09R1_083.ab1   113 
  121    USDA007_G05_BE498820Ld01P017C03C09F1_035.ab1   117 
  129    USDA007_G11_BE498820Ld01P017C03C09R1_083.ab1   129 
  141    USDA007_G05_BE498820Ld01P017C03C09F1_035.ab1   137 
  145    USDA007_G11_BE498820Ld01P017C03C09R1_083.ab1   145 
  157    USDA007_G05_BE498820Ld01P017C03C09F1_035.ab1   153 
Contig length: old 166, new 167

Contig length: old 167, new 167
New start: 0