No. words: 941; after pruning: 915


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 1.3 (1,1:308)  265  2.33 0.00 0.67  USDA007_D06_BE498820Ld06P017C03C09F1_042.ab1       11   310 (147)  C USDA007_D12_BE498820Ld06P017C03C09R1_090.ab1   (186)   298     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  132 nodes

 68 str. conn. components

Path
    1  C USDA007_D12_BE498820Ld06P017C03C09R1_090.ab1   484 
  322    USDA007_D06_BE498820Ld06P017C03C09F1_042.ab1   146 
  346  C USDA007_D12_BE498820Ld06P017C03C09R1_090.ab1   139 
  370    USDA007_D06_BE498820Ld06P017C03C09F1_042.ab1   194 
Contig length: old 632, new 633

Contig length: old 633, new 633
New start: 0