No. words: 427; after pruning: 401


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 2.0 (1,1:163)  152  0.00 0.62 0.62  USDA028F_F12_BE498820Sn31P035B06P017C091F1_086.ab1        3   163 (52)  C USDA028R_F12_BE498820Sn31P035B06P017C091R1_086.ab1   (50)   162     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C USDA028R_F12_BE498820Sn31P035B06P017C091R1_086.ab1   212 
  111    USDA028F_F12_BE498820Sn31P035B06P017C091F1_086.ab1    62 
  123  C USDA028R_F12_BE498820Sn31P035B06P017C091R1_086.ab1    90 
  127    USDA028F_F12_BE498820Sn31P035B06P017C091F1_086.ab1    78 
  135  C USDA028R_F12_BE498820Sn31P035B06P017C091R1_086.ab1    78 
  139    USDA028F_F12_BE498820Sn31P035B06P017C091F1_086.ab1    90 
  143  C USDA028R_F12_BE498820Sn31P035B06P017C091R1_086.ab1    70 
  147    USDA028F_F12_BE498820Sn31P035B06P017C091F1_086.ab1    98 
  159  C USDA028R_F12_BE498820Sn31P035B06P017C091R1_086.ab1    54 
  163    USDA028F_F12_BE498820Sn31P035B06P017C091F1_086.ab1   114 
Contig length: old 263, new 264

Contig length: old 264, new 264
New start: 0