No. words: 435; after pruning: 409


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 0.6 (1,1:173)  163  0.00 0.58 0.58  USDA028F_B11_BE498820Ta20P035B06P017C091F1_093.ab1        2   174 (40)  C USDA028R_B11_BE498820Ta20P035B06P017C091R1_093.ab1   (48)   173     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  82 nodes

 43 str. conn. components

Path
    1  C USDA028R_B11_BE498820Ta20P035B06P017C091R1_093.ab1   221 
   97    USDA028F_B11_BE498820Ta20P035B06P017C091F1_093.ab1    49 
  101  C USDA028R_B11_BE498820Ta20P035B06P017C091R1_093.ab1   121 
  109    USDA028F_B11_BE498820Ta20P035B06P017C091F1_093.ab1    61 
  117  C USDA028R_B11_BE498820Ta20P035B06P017C091R1_093.ab1   105 
  129    USDA028F_B11_BE498820Ta20P035B06P017C091F1_093.ab1    81 
  141  C USDA028R_B11_BE498820Ta20P035B06P017C091R1_093.ab1    81 
  145    USDA028F_B11_BE498820Ta20P035B06P017C091F1_093.ab1    97 
  169  C USDA028R_B11_BE498820Ta20P035B06P017C091R1_093.ab1    53 
  173    USDA028F_B11_BE498820Ta20P035B06P017C091F1_093.ab1   125 
Contig length: old 261, new 262

Contig length: old 262, new 262
New start: 0