No. words: 410; after pruning: 384


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.4 (1,1:146)  138  0.00 0.00 1.35  USDA028F_E11_BE498820Ta23P035B06P017C091F1_087.ab1        1   148 (45)  C USDA028R_E11_BE498820Ta23P035B06P017C091R1_087.ab1   (71)   146     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  68 nodes

 36 str. conn. components

Path
    1  C USDA028R_E11_BE498820Ta23P035B06P017C091R1_087.ab1   217 
   99    USDA028F_E11_BE498820Ta23P035B06P017C091F1_087.ab1    28 
  103  C USDA028R_E11_BE498820Ta23P035B06P017C091R1_087.ab1   115 
  111    USDA028F_E11_BE498820Ta23P035B06P017C091F1_087.ab1    40 
  119  C USDA028R_E11_BE498820Ta23P035B06P017C091R1_087.ab1    99 
  123    USDA028F_E11_BE498820Ta23P035B06P017C091F1_087.ab1    52 
  143  C USDA028R_E11_BE498820Ta23P035B06P017C091R1_087.ab1    75 
  151    USDA028F_E11_BE498820Ta23P035B06P017C091F1_087.ab1    80 
  171  C USDA028R_E11_BE498820Ta23P035B06P017C091R1_087.ab1    47 
  175    USDA028F_E11_BE498820Ta23P035B06P017C091F1_087.ab1   104 
Contig length: old 263, new 264

Contig length: old 264, new 264
New start: 0