No. words: 2091; after pruning: 2052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.0 (1,1:14)  704  0.14 0.00 0.00  USDA004R_D03_BE500714As02P004B04B10R1_026.ab1       15   733 (3)    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1        1   719 (9) *
Merge:(0)    0    0.0 13.4 (2,1:714)  607  0.48 0.00 0.00  USDA004R_D03_BE500714As02P004B04B10R1_026.ab1       89   715 (21)  C USDA004F_D03_BE500714As02P004B04B10F1_026.ab1   (0)   627     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  960 nodes

 351 str. conn. components

Path
    1    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1     1 
   18    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1     4 
   22    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1    22 
   38    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1    24 
   42    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1    42 
   58    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1    44 
   82    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1    82 
   95    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1    81 
  103    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1   103 
  110    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1    96 
  118    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1   118 
  122    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1   108 
  481  C USDA004F_D03_BE500714As02P004B04B10F1_026.ab1   235 
  484    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1   484 
  486    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1   472 
  513  C USDA004F_D03_BE500714As02P004B04B10F1_026.ab1   203 
  521    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1   507 
  573  C USDA004F_D03_BE500714As02P004B04B10F1_026.ab1   143 
  577    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1   563 
  586    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1   586 
  596  C USDA004F_D03_BE500714As02P004B04B10F1_026.ab1   120 
  605    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1   591 
  609  C USDA004F_D03_BE500714As02P004B04B10F1_026.ab1   107 
  613    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1   599 
  614    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1   614 
  616  C USDA004F_D03_BE500714As02P004B04B10F1_026.ab1   100 
  624    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1   624 
  626    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1   612 
  630    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1   630 
  648  C USDA004F_D03_BE500714As02P004B04B10F1_026.ab1    68 
  649    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1   635 
  650    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1   650 
  660  C USDA004F_D03_BE500714As02P004B04B10F1_026.ab1    56 
  696    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1   696 
  697    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1   683 
  700  C USDA004F_D03_BE500714As02P004B04B10F1_026.ab1    16 
  704    USDA004R_D03_BE500714As02P004B04B10R1_026.ab1   704 
  712    USDA006R3_D01_BE500714As02P004B04B10R3_009.ab1   698 
Contig length: old 742, new 742

Contig length: old 742, new 742
New start: 0