No. words: 2094; after pruning: 2055


Histogram of relative pair offsets, for read pairs with multiple alignments:
99    18

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.8 (1,1:0)  714  0.27 0.00 0.00  USDA004R_E03_BE500714At01P004B04B10R1_019.ab1        1   732 (0)    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1        1   732 (7) *
Merge:(0)    0    0.0 12.7 (2,1:686)  585  0.80 0.16 0.16  USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1       65   687 (52)  C USDA004F_E03_BE500714At01P004B04B10F1_019.ab1   (0)   623     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       1 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  938 nodes

 357 str. conn. components

Path
    1    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1     1 
    4    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1     4 
   19    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1    19 
   27    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1    27 
  472    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1   472 
  478    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1   478 
  538    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1   538 
  558    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1   558 
  560    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1   560 
  568    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1   568 
  570    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1   570 
  584    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1   584 
  612    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1   612 
  634    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1   634 
  640    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1   640 
  642    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1   642 
  658    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1   658 
  664  C USDA004F_E03_BE500714At01P004B04B10F1_019.ab1    24 
  668    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1   668 
  674    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1   674 
  676    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1   676 
  680    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1   680 
  690    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1   690 
  706    USDA004R_E03_BE500714At01P004B04B10R1_019.ab1   706 
  718    USDA006R3_E01_BE500714At01P004B04B10R3_007.ab1   718 
Contig length: old 739, new 739

Contig length: old 739, new 739
New start: 0