No. words: 2177; after pruning: 2138


Histogram of relative pair offsets, for read pairs with multiple alignments:
99    18

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.3 (1,1:3)  721  0.00 0.00 0.00  USDA004R_F03_BE500714At02P004B04B10R1_027.ab1        4   736 (0)    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1        1   733 (12) *
Merge:(0)    0    0.0 14.9 (2,1:705)  673  0.29 0.14 0.00  USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1        9   703 (42)  C USDA004F_F03_BE500714At02P004B04B10F1_027.ab1   (0)   696     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       1 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  1046 nodes

 257 str. conn. components

Path
    1    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1     1 
   17    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1    14 
   21    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1    21 
   53    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1    50 
   55    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1    55 
   57    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1    54 
   81    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1    81 
   95    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1    92 
  103    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1   103 
  117    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   114 
  419    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1   419 
  435    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   432 
  463    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1   463 
  471    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   468 
  475    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1   475 
  483    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   480 
  547    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1   547 
  551    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   548 
  563  C USDA004F_F03_BE500714At02P004B04B10F1_027.ab1   144 
  575    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1   575 
  579    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   576 
  587  C USDA004F_F03_BE500714At02P004B04B10F1_027.ab1   120 
  591    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   588 
  595  C USDA004F_F03_BE500714At02P004B04B10F1_027.ab1   112 
  599    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1   599 
  607  C USDA004F_F03_BE500714At02P004B04B10F1_027.ab1   100 
  619    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   616 
  631    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1   631 
  635    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   632 
  643  C USDA004F_F03_BE500714At02P004B04B10F1_027.ab1    64 
  695    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1   695 
  699  C USDA004F_F03_BE500714At02P004B04B10F1_027.ab1     8 
  703    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   700 
  715    USDA004R_F03_BE500714At02P004B04B10R1_027.ab1   715 
  719    USDA006R3_F01_BE500714At02P004B04B10R3_005.ab1   716 
Contig length: old 748, new 748

Contig length: old 748, new 748
New start: 0