No. words: 1207; after pruning: 1153


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:562)  547  0.53 0.00 0.00  USDA027F_H03_BE500714Sn24P035C06P004B101F1_017.ab1        1   563 (46)  C USDA027R_H03_BE500714Sn24P035C06P004B101R1_017.ab1   (35)   563     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C USDA027R_H03_BE500714Sn24P035C06P004B101R1_017.ab1   598 
   67    USDA027F_H03_BE500714Sn24P035C06P004B101F1_017.ab1    32 
   91  C USDA027R_H03_BE500714Sn24P035C06P004B101R1_017.ab1   508 
  115    USDA027F_H03_BE500714Sn24P035C06P004B101F1_017.ab1    80 
  119  C USDA027R_H03_BE500714Sn24P035C06P004B101R1_017.ab1   480 
  207    USDA027F_H03_BE500714Sn24P035C06P004B101F1_017.ab1   172 
  263  C USDA027R_H03_BE500714Sn24P035C06P004B101R1_017.ab1   336 
  347    USDA027F_H03_BE500714Sn24P035C06P004B101F1_017.ab1   312 
  351  C USDA027R_H03_BE500714Sn24P035C06P004B101R1_017.ab1   248 
  359    USDA027F_H03_BE500714Sn24P035C06P004B101F1_017.ab1   324 
  363  C USDA027R_H03_BE500714Sn24P035C06P004B101R1_017.ab1   236 
  476    USDA027F_H03_BE500714Sn24P035C06P004B101F1_017.ab1   441 
  480  C USDA027R_H03_BE500714Sn24P035C06P004B101R1_017.ab1   119 
  484    USDA027F_H03_BE500714Sn24P035C06P004B101F1_017.ab1   449 
  500  C USDA027R_H03_BE500714Sn24P035C06P004B101R1_017.ab1    99 
  576    USDA027F_H03_BE500714Sn24P035C06P004B101F1_017.ab1   541 
  588  C USDA027R_H03_BE500714Sn24P035C06P004B101R1_017.ab1    11 
  592    USDA027F_H03_BE500714Sn24P035C06P004B101F1_017.ab1   557 
Contig length: old 644, new 644

Contig length: old 644, new 644
New start: 0