No. words: 1213; after pruning: 1173


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:569)  545  0.18 0.18 0.18  USDA027F_H06_BE500714Sn24P035D06P004B101F1_034.ab1        1   570 (38)  C USDA027R_H06_BE500714Sn24P035D06P004B101R1_034.ab1   (35)   570     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA027R_H06_BE500714Sn24P035D06P004B101R1_034.ab1   605 
   88    USDA027F_H06_BE500714Sn24P035D06P004B101F1_034.ab1    52 
  116  C USDA027R_H06_BE500714Sn24P035D06P004B101R1_034.ab1   490 
  124    USDA027F_H06_BE500714Sn24P035D06P004B101F1_034.ab1    88 
  132  C USDA027R_H06_BE500714Sn24P035D06P004B101R1_034.ab1   474 
  140    USDA027F_H06_BE500714Sn24P035D06P004B101F1_034.ab1   104 
  180  C USDA027R_H06_BE500714Sn24P035D06P004B101R1_034.ab1   426 
  188    USDA027F_H06_BE500714Sn24P035D06P004B101F1_034.ab1   152 
  400  C USDA027R_H06_BE500714Sn24P035D06P004B101R1_034.ab1   206 
  404    USDA027F_H06_BE500714Sn24P035D06P004B101F1_034.ab1   368 
  460  C USDA027R_H06_BE500714Sn24P035D06P004B101R1_034.ab1   146 
  464    USDA027F_H06_BE500714Sn24P035D06P004B101F1_034.ab1   428 
  468  C USDA027R_H06_BE500714Sn24P035D06P004B101R1_034.ab1   138 
  492    USDA027F_H06_BE500714Sn24P035D06P004B101F1_034.ab1   456 
  532  C USDA027R_H06_BE500714Sn24P035D06P004B101R1_034.ab1    74 
  567    USDA027F_H06_BE500714Sn24P035D06P004B101F1_034.ab1   531 
  571  C USDA027R_H06_BE500714Sn24P035D06P004B101R1_034.ab1    35 
  579    USDA027F_H06_BE500714Sn24P035D06P004B101F1_034.ab1   543 
Contig length: old 643, new 644

Contig length: old 644, new 644
New start: 0