No. words: 1222; after pruning: 1196


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.9 (1,1:570)  550  0.00 0.18 0.18  USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1        2   571 (45)  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   (36)   570     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   606 
   65    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1    29 
   69  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   538 
   81    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1    45 
  113  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   494 
  117    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1    81 
  133  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   474 
  161    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   125 
  177  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   430 
  185    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   149 
  189  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   418 
  217    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   181 
  261  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   346 
  285    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   249 
  293  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   314 
  301    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   265 
  305  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   302 
  373    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   337 
  381  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   226 
  401    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   365 
  425  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   182 
  437    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   401 
  441  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   166 
  473    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   437 
  477  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1   130 
  517    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   481 
  525  C USDA027R_C02_BE500714Ta11P035C06P004B101R1_012.ab1    82 
  589    USDA027F_C02_BE500714Ta11P035C06P004B101F1_012.ab1   553 
Contig length: old 651, new 652

Contig length: old 652, new 652
New start: 0