No. words: 1190; after pruning: 1164


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:581)  551  0.17 0.17 0.34  USDA027F_C05_BE500714Ta11P035D06P004B101F1_043.ab1        1   583 (1)  C USDA027R_C05_BE500714Ta11P035D06P004B101R1_043.ab1   (24)   582     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA027R_C05_BE500714Ta11P035D06P004B101R1_043.ab1   606 
   87    USDA027F_C05_BE500714Ta11P035D06P004B101F1_043.ab1    62 
   99  C USDA027R_C05_BE500714Ta11P035D06P004B101R1_043.ab1   508 
  103    USDA027F_C05_BE500714Ta11P035D06P004B101F1_043.ab1    78 
  107  C USDA027R_C05_BE500714Ta11P035D06P004B101R1_043.ab1   500 
  111    USDA027F_C05_BE500714Ta11P035D06P004B101F1_043.ab1    86 
  115  C USDA027R_C05_BE500714Ta11P035D06P004B101R1_043.ab1   492 
  127    USDA027F_C05_BE500714Ta11P035D06P004B101F1_043.ab1   102 
  131  C USDA027R_C05_BE500714Ta11P035D06P004B101R1_043.ab1   476 
  171    USDA027F_C05_BE500714Ta11P035D06P004B101F1_043.ab1   146 
  175  C USDA027R_C05_BE500714Ta11P035D06P004B101R1_043.ab1   432 
  203    USDA027F_C05_BE500714Ta11P035D06P004B101F1_043.ab1   178 
  223  C USDA027R_C05_BE500714Ta11P035D06P004B101R1_043.ab1   384 
  235    USDA027F_C05_BE500714Ta11P035D06P004B101F1_043.ab1   210 
  243  C USDA027R_C05_BE500714Ta11P035D06P004B101R1_043.ab1   364 
  495    USDA027F_C05_BE500714Ta11P035D06P004B101F1_043.ab1   470 
  499  C USDA027R_C05_BE500714Ta11P035D06P004B101R1_043.ab1   108 
  581    USDA027F_C05_BE500714Ta11P035D06P004B101F1_043.ab1   556 
Contig length: old 608, new 609

Contig length: old 609, new 609
New start: 0