No. words: 1205; after pruning: 1179


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.1 (1,1:564)  552  0.00 0.00 0.00  USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1        2   565 (53)  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1   (23)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1   587 
   55    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1    33 
   59  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1   529 
   67    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1    45 
   87  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1   501 
  111    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1    89 
  115  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1   473 
  359    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1   337 
  375  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1   213 
  387    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1   365 
  391  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1   197 
  403    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1   381 
  407  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1   181 
  483    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1   461 
  499  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1    89 
  503    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1   481 
  507  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1    81 
  519    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1   497 
  523  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1    65 
  555    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1   533 
  559  C USDA027R_D02_BE500714Ta12P035C06P004B101R1_010.ab1    29 
  571    USDA027F_D02_BE500714Ta12P035C06P004B101F1_010.ab1   549 
Contig length: old 640, new 640

Contig length: old 640, new 640
New start: 0