No. words: 1225; after pruning: 1199


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:578)  545  0.17 0.34 0.34  USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1        1   580 (41)  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   (24)   580     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   604 
   90    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1    64 
   98  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   507 
  126    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   100 
  130  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   475 
  142    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   116 
  146  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   459 
  150    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   124 
  162  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   443 
  194    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   168 
  198  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   407 
  206    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   180 
  218  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   387 
  222    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   196 
  226  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   379 
  230    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   204 
  270  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   335 
  274    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   248 
  290  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   315 
  318    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   292 
  338  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   267 
  370    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   344 
  374  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   231 
  382    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   356 
  390  C USDA027R_D05_BE500714Ta12P035D06P004B101R1_041.ab1   215 
  583    USDA027F_D05_BE500714Ta12P035D06P004B101F1_041.ab1   557 
Contig length: old 646, new 647

Contig length: old 647, new 647
New start: 0