No. words: 1204; after pruning: 1178


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.0 (1,1:566)  549  0.00 0.00 0.18  USDA027F_E02_BE500714Ta13P035C06P004B101F1_008.ab1        1   565 (38)  C USDA027R_E02_BE500714Ta13P035C06P004B101R1_008.ab1   (35)   566     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA027R_E02_BE500714Ta13P035C06P004B101R1_008.ab1   601 
  115    USDA027F_E02_BE500714Ta13P035C06P004B101F1_008.ab1    80 
  119  C USDA027R_E02_BE500714Ta13P035C06P004B101R1_008.ab1   483 
  363    USDA027F_E02_BE500714Ta13P035C06P004B101F1_008.ab1   328 
  375  C USDA027R_E02_BE500714Ta13P035C06P004B101R1_008.ab1   227 
  463    USDA027F_E02_BE500714Ta13P035C06P004B101F1_008.ab1   428 
  467  C USDA027R_E02_BE500714Ta13P035C06P004B101R1_008.ab1   135 
  503    USDA027F_E02_BE500714Ta13P035C06P004B101F1_008.ab1   468 
  511  C USDA027R_E02_BE500714Ta13P035C06P004B101R1_008.ab1    91 
  519    USDA027F_E02_BE500714Ta13P035C06P004B101F1_008.ab1   484 
  523  C USDA027R_E02_BE500714Ta13P035C06P004B101R1_008.ab1    79 
  555    USDA027F_E02_BE500714Ta13P035C06P004B101F1_008.ab1   520 
  559  C USDA027R_E02_BE500714Ta13P035C06P004B101R1_008.ab1    43 
  571    USDA027F_E02_BE500714Ta13P035C06P004B101F1_008.ab1   536 
Contig length: old 637, new 638

Contig length: old 638, new 638
New start: 0