No. words: 1241; after pruning: 1215


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:579)  553  0.17 0.17 0.17  USDA027F_E05_BE500714Ta13P035D06P004B101F1_039.ab1        1   580 (56)  C USDA027R_E05_BE500714Ta13P035D06P004B101R1_039.ab1   (25)   580     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA027R_E05_BE500714Ta13P035D06P004B101R1_039.ab1   605 
  128    USDA027F_E05_BE500714Ta13P035D06P004B101F1_039.ab1   102 
  132  C USDA027R_E05_BE500714Ta13P035D06P004B101R1_039.ab1   474 
  156    USDA027F_E05_BE500714Ta13P035D06P004B101F1_039.ab1   130 
  164  C USDA027R_E05_BE500714Ta13P035D06P004B101R1_039.ab1   442 
  196    USDA027F_E05_BE500714Ta13P035D06P004B101F1_039.ab1   170 
  200  C USDA027R_E05_BE500714Ta13P035D06P004B101R1_039.ab1   406 
  204    USDA027F_E05_BE500714Ta13P035D06P004B101F1_039.ab1   178 
  212  C USDA027R_E05_BE500714Ta13P035D06P004B101R1_039.ab1   394 
  224    USDA027F_E05_BE500714Ta13P035D06P004B101F1_039.ab1   198 
  248  C USDA027R_E05_BE500714Ta13P035D06P004B101R1_039.ab1   358 
  272    USDA027F_E05_BE500714Ta13P035D06P004B101F1_039.ab1   246 
  280  C USDA027R_E05_BE500714Ta13P035D06P004B101R1_039.ab1   326 
  368    USDA027F_E05_BE500714Ta13P035D06P004B101F1_039.ab1   342 
  372  C USDA027R_E05_BE500714Ta13P035D06P004B101R1_039.ab1   234 
  520    USDA027F_E05_BE500714Ta13P035D06P004B101F1_039.ab1   494 
  524  C USDA027R_E05_BE500714Ta13P035D06P004B101R1_039.ab1    82 
  600    USDA027F_E05_BE500714Ta13P035D06P004B101F1_039.ab1   575 
Contig length: old 661, new 661

Contig length: old 661, new 662
New start: 0 
I Change at: 590; seg lengths: entry 1, contig 0