No. words: 1220; after pruning: 1166


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:582)  561  0.34 0.17 0.17  USDA027F_F02_BE500714Ta14P035C06P004B101F1_006.ab1        1   583 (41)  C USDA027R_F02_BE500714Ta14P035C06P004B101R1_006.ab1   (13)   583     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA027R_F02_BE500714Ta14P035C06P004B101R1_006.ab1   596 
   67    USDA027F_F02_BE500714Ta14P035C06P004B101F1_006.ab1    53 
   99  C USDA027R_F02_BE500714Ta14P035C06P004B101R1_006.ab1   498 
  111    USDA027F_F02_BE500714Ta14P035C06P004B101F1_006.ab1    97 
  119  C USDA027R_F02_BE500714Ta14P035C06P004B101R1_006.ab1   478 
  167    USDA027F_F02_BE500714Ta14P035C06P004B101F1_006.ab1   153 
  259  C USDA027R_F02_BE500714Ta14P035C06P004B101R1_006.ab1   338 
  475    USDA027F_F02_BE500714Ta14P035C06P004B101F1_006.ab1   461 
  515  C USDA027R_F02_BE500714Ta14P035C06P004B101R1_006.ab1    82 
  519    USDA027F_F02_BE500714Ta14P035C06P004B101F1_006.ab1   505 
  539  C USDA027R_F02_BE500714Ta14P035C06P004B101R1_006.ab1    58 
  571    USDA027F_F02_BE500714Ta14P035C06P004B101F1_006.ab1   557 
Contig length: old 637, new 638

Contig length: old 638, new 638
New start: 0