No. words: 1220; after pruning: 1194


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.3 (1,1:574)  563  0.00 0.00 0.00  USDA027F_G02_BE500714Ta15P035C06P004B101F1_004.ab1        2   575 (48)  C USDA027R_G02_BE500714Ta15P035C06P004B101R1_004.ab1   (23)   574     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C USDA027R_G02_BE500714Ta15P035C06P004B101R1_004.ab1   597 
  111    USDA027F_G02_BE500714Ta15P035C06P004B101F1_004.ab1    89 
  119  C USDA027R_G02_BE500714Ta15P035C06P004B101R1_004.ab1   479 
  499    USDA027F_G02_BE500714Ta15P035C06P004B101F1_004.ab1   477 
  507  C USDA027R_G02_BE500714Ta15P035C06P004B101R1_004.ab1    91 
  519    USDA027F_G02_BE500714Ta15P035C06P004B101F1_004.ab1   497 
  523  C USDA027R_G02_BE500714Ta15P035C06P004B101R1_004.ab1    75 
  591    USDA027F_G02_BE500714Ta15P035C06P004B101F1_004.ab1   569 
Contig length: old 645, new 645

Contig length: old 645, new 645
New start: 0