No. words: 1224; after pruning: 1198


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:579)  553  0.17 0.00 0.34  USDA027F_G05_BE500714Ta15P035D06P004B101F1_035.ab1        1   581 (40)  C USDA027R_G05_BE500714Ta15P035D06P004B101R1_035.ab1   (24)   579     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C USDA027R_G05_BE500714Ta15P035D06P004B101R1_035.ab1   603 
   84    USDA027F_G05_BE500714Ta15P035D06P004B101F1_035.ab1    60 
   88  C USDA027R_G05_BE500714Ta15P035D06P004B101R1_035.ab1   516 
  152    USDA027F_G05_BE500714Ta15P035D06P004B101F1_035.ab1   128 
  160  C USDA027R_G05_BE500714Ta15P035D06P004B101R1_035.ab1   444 
  208    USDA027F_G05_BE500714Ta15P035D06P004B101F1_035.ab1   184 
  220  C USDA027R_G05_BE500714Ta15P035D06P004B101R1_035.ab1   384 
  228    USDA027F_G05_BE500714Ta15P035D06P004B101F1_035.ab1   204 
  236  C USDA027R_G05_BE500714Ta15P035D06P004B101R1_035.ab1   368 
  256    USDA027F_G05_BE500714Ta15P035D06P004B101F1_035.ab1   232 
  260  C USDA027R_G05_BE500714Ta15P035D06P004B101R1_035.ab1   344 
  492    USDA027F_G05_BE500714Ta15P035D06P004B101F1_035.ab1   468 
  500  C USDA027R_G05_BE500714Ta15P035D06P004B101R1_035.ab1   104 
  512    USDA027F_G05_BE500714Ta15P035D06P004B101F1_035.ab1   488 
  516  C USDA027R_G05_BE500714Ta15P035D06P004B101R1_035.ab1    88 
  524    USDA027F_G05_BE500714Ta15P035D06P004B101F1_035.ab1   500 
  528  C USDA027R_G05_BE500714Ta15P035D06P004B101R1_035.ab1    76 
  584    USDA027F_G05_BE500714Ta15P035D06P004B101F1_035.ab1   560 
Contig length: old 644, new 645

Contig length: old 645, new 645
New start: 0