No. words: 1195; after pruning: 1169


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:571)  549  0.17 0.17 0.17  USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1        1   572 (14)  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   (37)   572     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   609 
   99    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1    61 
  103  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   507 
  107    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1    69 
  115  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   495 
  139    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   101 
  151  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   459 
  167    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   129 
  191  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   419 
  207    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   169 
  211  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   399 
  219    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   181 
  239  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   371 
  247    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   209 
  271  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   339 
  287    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   249 
  295  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   315 
  375    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   337 
  379  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   231 
  419    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   381 
  423  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   187 
  439    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   401 
  443  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1   167 
  517    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   479 
  521  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1    89 
  533    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   495 
  537  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1    73 
  569    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   531 
  573  C USDA027R_H02_BE500714Ta16P035C06P004B101R1_002.ab1    37 
  581    USDA027F_H02_BE500714Ta16P035C06P004B101F1_002.ab1   543 
Contig length: old 623, new 624

Contig length: old 624, new 624
New start: 0