No. words: 1217; after pruning: 1191


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:562)  532  0.71 0.00 0.18  USDA027F_H05_BE500714Ta16P035D06P004B101F1_033.ab1        1   563 (48)  C USDA027R_H05_BE500714Ta16P035D06P004B101R1_033.ab1   (44)   562     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C USDA027R_H05_BE500714Ta16P035D06P004B101R1_033.ab1   606 
  124    USDA027F_H05_BE500714Ta16P035D06P004B101F1_033.ab1    80 
  132  C USDA027R_H05_BE500714Ta16P035D06P004B101R1_033.ab1   475 
  140    USDA027F_H05_BE500714Ta16P035D06P004B101F1_033.ab1    96 
  144  C USDA027R_H05_BE500714Ta16P035D06P004B101R1_033.ab1   463 
  164    USDA027F_H05_BE500714Ta16P035D06P004B101F1_033.ab1   120 
  188  C USDA027R_H05_BE500714Ta16P035D06P004B101R1_033.ab1   419 
  204    USDA027F_H05_BE500714Ta16P035D06P004B101F1_033.ab1   160 
  220  C USDA027R_H05_BE500714Ta16P035D06P004B101R1_033.ab1   387 
  240    USDA027F_H05_BE500714Ta16P035D06P004B101F1_033.ab1   196 
  252  C USDA027R_H05_BE500714Ta16P035D06P004B101R1_033.ab1   355 
  264    USDA027F_H05_BE500714Ta16P035D06P004B101F1_033.ab1   220 
  272  C USDA027R_H05_BE500714Ta16P035D06P004B101R1_033.ab1   335 
  524    USDA027F_H05_BE500714Ta16P035D06P004B101F1_033.ab1   480 
  528  C USDA027R_H05_BE500714Ta16P035D06P004B101R1_033.ab1    79 
  536    USDA027F_H05_BE500714Ta16P035D06P004B101F1_033.ab1   492 
  544  C USDA027R_H05_BE500714Ta16P035D06P004B101R1_033.ab1    63 
  594    USDA027F_H05_BE500714Ta16P035D06P004B101F1_033.ab1   550 
Contig length: old 654, new 655

Contig length: old 655, new 655
New start: 0