No. words: 1215; after pruning: 1189


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:578)  558  0.00 0.17 0.17  USDA027F_A03_BE500714Ta17P035C06P004B101F1_031.ab1        1   579 (44)  C USDA027R_A03_BE500714Ta17P035C06P004B101R1_031.ab1   (13)   579     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C USDA027R_A03_BE500714Ta17P035C06P004B101R1_031.ab1   592 
   55    USDA027F_A03_BE500714Ta17P035C06P004B101F1_031.ab1    41 
   59  C USDA027R_A03_BE500714Ta17P035C06P004B101R1_031.ab1   534 
  111    USDA027F_A03_BE500714Ta17P035C06P004B101F1_031.ab1    97 
  119  C USDA027R_A03_BE500714Ta17P035C06P004B101R1_031.ab1   474 
  155    USDA027F_A03_BE500714Ta17P035C06P004B101F1_031.ab1   141 
  167  C USDA027R_A03_BE500714Ta17P035C06P004B101R1_031.ab1   426 
  283    USDA027F_A03_BE500714Ta17P035C06P004B101F1_031.ab1   269 
  291  C USDA027R_A03_BE500714Ta17P035C06P004B101R1_031.ab1   302 
  355    USDA027F_A03_BE500714Ta17P035C06P004B101F1_031.ab1   341 
  367  C USDA027R_A03_BE500714Ta17P035C06P004B101R1_031.ab1   226 
  407    USDA027F_A03_BE500714Ta17P035C06P004B101F1_031.ab1   393 
  411  C USDA027R_A03_BE500714Ta17P035C06P004B101R1_031.ab1   182 
  581    USDA027F_A03_BE500714Ta17P035C06P004B101F1_031.ab1   568 
Contig length: old 636, new 636

Contig length: old 636, new 637
New start: 0 
I Change at: 570; seg lengths: entry 1, contig 0