No. words: 1236; after pruning: 1210


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.4 (1,1:586)  564  0.00 0.17 0.00  USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1        1   584 (40)  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   (24)   588     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   612 
  112    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1    87 
  116  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   497 
  140    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   115 
  148  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   465 
  152    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   127 
  180  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   433 
  220    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   195 
  264  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   349 
  344    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   319 
  352  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   261 
  368    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   343 
  384  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   229 
  412    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   387 
  420  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   193 
  432    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   407 
  460  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   153 
  464    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   439 
  468  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   145 
  492    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   467 
  500  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1   113 
  508    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   483 
  520  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1    93 
  528    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   503 
  532  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1    81 
  568    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   543 
  572  C USDA027R_A06_BE500714Ta17P035D06P004B101R1_048.ab1    41 
  576    USDA027F_A06_BE500714Ta17P035D06P004B101F1_048.ab1   551 
Contig length: old 649, new 649

Contig length: old 649, new 649
New start: 0