No. words: 1218; after pruning: 1192


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:572)  557  0.00 0.17 0.00  USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1        1   573 (58)  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1   (13)   574     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1   587 
   71    USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1    57 
  103  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1   485 
  107    USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1    93 
  119  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1   469 
  167    USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1   153 
  179  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1   409 
  203    USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1   189 
  239  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1   349 
  283    USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1   269 
  291  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1   297 
  359    USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1   345 
  367  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1   221 
  423    USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1   409 
  427  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1   161 
  463    USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1   449 
  467  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1   121 
  555    USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1   541 
  559  C USDA027R_B03_BE500714Ta18P035C06P004B101R1_029.ab1    29 
  571    USDA027F_B03_BE500714Ta18P035C06P004B101F1_029.ab1   557 
Contig length: old 645, new 645

Contig length: old 645, new 645
New start: 0