No. words: 1219; after pruning: 1193


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.2 (1,1:572)  556  0.00 0.00 0.17  USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1        2   573 (52)  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   (23)   571     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   594 
   31    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1     9 
   35  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   560 
   67    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1    45 
   87  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   508 
   95    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1    73 
  103  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   492 
  107    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1    85 
  119  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   476 
  127    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   105 
  131  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   464 
  167    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   145 
  179  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   416 
  195    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   173 
  199  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   396 
  203    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   181 
  259  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   336 
  271    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   249 
  275  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   320 
  339    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   317 
  343  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   252 
  359    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   337 
  363  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   232 
  475    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   453 
  479  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   116 
  487    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   465 
  491  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1   104 
  503    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   481 
  511  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1    84 
  519    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   497 
  523  C USDA027R_C03_BE500714Ta19P035C06P004B101R1_027.ab1    72 
  575    USDA027F_C03_BE500714Ta19P035C06P004B101F1_027.ab1   553 
Contig length: old 646, new 647

Contig length: old 647, new 647
New start: 0