No. words: 1112; after pruning: 1086


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:578)  486  0.59 0.00 0.00  USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1        1   508 (0)  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   (25)   579    72 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   604 
   53    USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1    28 
   57  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   548 
   69    USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1    44 
   73  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   532 
   85    USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1    60 
  121  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   484 
  129    USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1   104 
  145  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   460 
  149    USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1   124 
  153  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   452 
  161    USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1   136 
  165  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   440 
  193    USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1   168 
  201  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   404 
  205    USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1   180 
  217  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   388 
  241    USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1   216 
  289  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   316 
  297    USDA027F_C06_BE500714Ta19P035D06P004B101F1_044.ab1   272 
  305  C USDA027R_C06_BE500714Ta19P035D06P004B101R1_044.ab1   300 
Contig length: old 604, new 604

Contig length: old 604, new 604
New start: 0